Beginning Bioinformatics

Bioinformatics, the use of computers in biology research, has been increasing in importance during the past decade as the Human Genome Project went from its beginning to the announcement last year of a “draft” of the complete sequence of…

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Request Tracker

If you’ve ever had to do user support, then you’ll be familiar with the following scenario: A question comes in from a user, and you write an e-mail reply. However, by the time you’ve hit “send,” another member of…

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Parsing Protein Domains with Perl

The Perl programming language is popular with biologists because of its practicality. In my book, Beginning Perl for Bioinformatics, I demonstrate how many of the things biologists want to write programs for are readily-even enjoyably-accomplished with Perl. My book…

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The Lighter Side of CPAN

Programming can be a stressful game. We sit at our machines, day in, day out, endlessly staring at a monitor fathoming where that last devious bug has buried itself. It’s not surprising then that sometimes it gets to be…

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Exegesis 3

Editor’s note: this document is out of date and remains here for historic interest. See Synopsis 3 for the current design information. Diamond lives (context-aware); Underscore space means concatenate; fat comma means pair; A pre-star will flatten; colon-equals will…

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